PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486691.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 179aa    MW: 20067 Da    PI: 10.1242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.4e-093457226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    kt lCr+f++ G C  G++C++aHg
  XP_004486691.1 34 KTQLCRRFMQ-GVCFLGPKCNYAHG 57
                    9*********.*************8 PP

2zf-CCCH222.9e-076991426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    +lCr f+r+ +C+yG +C+F H 
  XP_004486691.1 69 KLCRLFLRNKHCSYGHTCRFLHH 91
                    69********************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-83163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2723259IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-63258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-123263IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-63457IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8686593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-66594IPR000571Zinc finger, CCCH-type
SMARTSM003560.166792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-76892IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-56991IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVETETYPET QPHFKKPRIS EETHFNNNVN LKTKTQLCRR FMQGVCFLGP KCNYAHGSSE  60
LRTTTTTPKL CRLFLRNKHC SYGHTCRFLH HSSQQSQPVV MKNPGCRMMQ TCAAAAAATI  120
DGNSSAQNKI MQTSTTPTTN ASTSTVATSS LHKNGPYGVK FIFKKKELQK ISGIYADWI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486691.11e-134PREDICTED: zinc finger protein 36, C3H1 type-like 2
TrEMBLG7IUS51e-46G7IUS5_MEDTR; Uncharacterized protein
STRINGGLYMA13G44045.17e-37(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1595477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-11C3H family protein